Segmentation of the aortic root on angiography images
The article describes an approach based on neural network modeling, which is of great interest for segmenting different anatomical structures during TAVI. Given the complexity of analyzing large volumes of data for cardiac surgeons, the article pays special attention to the automatic analysis of medical data, training, and comparison of modem neural networks. Fifty neural networks were thoroughly examined and tested for predicting aortic root masks (encoders: U-net, U-net++, Linknet, FPN, DeepLabV3+ and decoders: Efficientnet-b0, Efficientnet-b1, Resnext50, Resnet34, Regnetx32). During the training and testing phases, the FPN Efficientnet-b0 cascade architecture demonstrated the best prediction accuracy with metrics IOU 0.771 and Dice 0.870. The conducted study shows that the proposed approach based on neural network cascades, which focuses not on detecting key points but on creating segmentation masks, allows for real-time prediction of the aortic valve and delivery system location, thereby facilitating correct valve positioning during TAVI. Contribution of the authors: the authors contributed equally to this article. The authors declare no conflicts of interests.
Keywords
segmentation,
transcatheter aortic valve replacement,
deep learning - CNN,
medical image analysis,
aortographyAuthors
Gerget Olga M. | V.A. Trapeznikov Institute of Control Sciences, RAS | olgagerget@mail.ru |
Laptev Nikita V. | Siberian State Medical University | laptev.nv@ssmu.ru |
Chernyavsky Michael A. | National Medical Research Center named after V.A. Almazov | machern @mail.ru |
Всего: 3
References
Ramesh K.K.D., Kiran Kumar G., Swapna K., Datta D., Suman Rajest S. A review of medical image segmentation algorithms // EAI Endorsed Transactions on Pervasive Health and Technology. 2021. V. 7 (27). Art. e6.
Li Y., Wu Y., He J., Jiang W., Wang J., Peng Y., Chen M. Automatic coronary artery segmentation and diagnosis of stenosis by deep learning based on computed tomographic coronary angiography // European Radiology. 2022. V. 32 (9). P. 6037-6045.
Popov M., Amanturdieva A., Zhaksylyk N., Alkanov A., Saniyazbekov A., Aimyshev T. et al. Dataset for Automatic Regionbased Coronary Artery Disease Diagnostics Using X-Ray Angiography Images // Scientific Data. 2024. V. 11 (1). Art. 20.
Zhu X., Cheng Z., Wang S., Chen X., Lu G. Coronary angiography image segmentation based on PSPNet // Computer Methods and Programs in Biomedicine. 2021. V. 200. Art. 105897.
Ronneberger O., Fischer P., Brox T. U-net: Convolutional networks for biomedical image segmentation // International Conference on Medical Image Computing and Computer-Assisted Intervention (MICCAI 2015). 5-9 October, Munich, Germany. 2015. P. 234-241.
Zhou Z., Rahman Siddiquee M.M., Tajbakhsh N., Liang J. Unet++: A nested u-net architecture for medical image segmentation // Deep Learning in Medical Image Analysis and Multimodal Learning for Clinical Decision Support: 4th International Workshop (DLMIA 2018). 20 September, Granada, Spain. 2018. P. 3-11.
Chaurasia A., Culurciello E. Linknet: Exploiting encoder representations for efficient semantic segmentation // 2017 IEEE Visual Communications and Image Processing (VCIP). 2017. P. 1-4.
Martinsson J., Mogren O. Semantic segmentation of fashion images using feature pyramid networks // Proc. 2019 International Conference on Computer Vision Workshop (ICCVW 2019). 2019.
Baheti B., Innani S., Gajre S., Talbar S. Semantic scene segmentation in unstructured environment with modified DeepLabV3+ // Pattern Recognition Letters. 2029. V. 138. P. 223-229.
Abdelgawad A., Hussein M.A., Naeem H., Abuellata R., Alghamdy S. A comparative study of TAVR versus SAVR in moderate and high-risk surgical patients: Hospital outcome and midterm results // Heart Surgery Forum. 2019. V. 22 (5). P. E331-E339.
The repository of the Research Laboratory for Processing and Analysis of Big Data (Tomsk Polytechnic University). URL: https://www.dropbox.com/sh/80wpfkdabhuo0l9/AADuysNg3sO00_vjhW8MgZ6Ba?dl=0 (accessed: 10.05.2024).
Pisano E.D., Zong S., Hemminger B.M., DeLuca M., Johnston R.E., Muller K. et al. Contrast limited adaptive histogram equalization image processing to improve the detection of simulated spiculations in dense mammograms // Journal of Digital Imaging. 1998. V. 11. P. 193-200.
RMSprop // Keras. URL: https://keras.io/api/optimizers/rmsprop/(accessed: 10.05.2024).